Top cofit genes for Pf6N2E2_960 from Pseudomonas fluorescens FW300-N2E2

Type IV secretory pathway, VirD4 components
SEED: Type IV secretory pathway, VirD4 components

Rank Hit Name Description Conserved? Cofitness  
1 Pf6N2E2_1266 Integrase no 0.29
2 Pf6N2E2_2217 ATP-dependent Clp protease ATP-binding subunit ClpX 0.46 0.28
3 Pf6N2E2_3918 D-cysteine desulfhydrase (EC 4.4.1.15) no 0.28
4 Pf6N2E2_3192 tRNA:Cm32/Um32 methyltransferase no 0.28
5 Pf6N2E2_5491 FOG: GGDEF domain no 0.27
6 Pf6N2E2_5988 hypothetical protein no 0.27
7 Pf6N2E2_3828 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) no 0.27
8 Pf6N2E2_5255 Outer membrane stress sensor protease DegS 0.35 0.27
9 Pf6N2E2_2329 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.27
10 Pf6N2E2_6077 Cysteine desulfurase (EC 2.8.1.7) no 0.27
11 Pf6N2E2_5219 FIG140336: TPR domain protein 0.34 0.25
12 Pf6N2E2_1276 FIG00958406: hypothetical protein no 0.25
13 Pf6N2E2_2768 Tricarboxylate transport protein TctC 0.32 0.24
14 Pf6N2E2_4795 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY no 0.24
15 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT 0.46 0.24
16 Pf6N2E2_5345 LppC putative lipoprotein 0.20 0.23
17 Pf6N2E2_5848 small component of pyruvate transporter (yjcH-like) (from data) no 0.23
18 Pf6N2E2_985 Multidrug resistance transporter, Bcr/CflA family no 0.23
19 Pf6N2E2_5272 Dihydroneopterin triphosphate epimerase no 0.23
20 Pf6N2E2_4587 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) no 0.23

Or look for negative cofitness