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Protein
Homologs
Top cofit genes for Pf6N2E2_813 from
Pseudomonas fluorescens FW300-N2E2
Response regulator
SEED: Response regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Pf6N2E2
_4152
alginate biosynthesis transcriptional regulatory protein AlgB
0.60
0.70
2
Pf6N2E2
_815
Signal transduction histidine kinase
0.31
0.67
3
Pf6N2E2
_816
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)
no
0.61
4
Pf6N2E2
_5278
Signal transduction histidine kinase
no
0.61
5
Pf6N2E2
_4150
probable exported protein YPO0432
no
0.60
6
Pf6N2E2
_818
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
0.32
0.59
7
Pf6N2E2
_2756
RNA polymerase sigma-H factor AlgT
0.30
0.51
8
Pf6N2E2
_3851
bacteriophytochrome heme oxygenase BphO
no
0.50
9
Pf6N2E2
_5825
FIG00958237: hypothetical protein
0.22
0.49
10
Pf6N2E2
_5255
Outer membrane stress sensor protease DegS
0.31
0.48
11
Pf6N2E2
_3504
Biosynthetic arginine decarboxylase (EC 4.1.1.19)
no
0.45
12
Pf6N2E2
_2217
ATP-dependent Clp protease ATP-binding subunit ClpX
no
0.45
13
Pf6N2E2
_5720
BarA sensory histidine kinase (= VarS = GacS)
0.50
0.44
14
Pf6N2E2
_3852
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)
0.29
0.42
15
Pf6N2E2
_3508
Probable two-component response regulator
no
0.42
16
Pf6N2E2
_3062
Membrane-associated zinc metalloprotease
0.28
0.42
17
Pf6N2E2
_6044
Sensor histidine kinase/response regulator
0.32
0.41
18
Pf6N2E2
_2022
BarA-associated response regulator UvrY (= GacA = SirA)
0.47
0.41
19
Pf6N2E2
_5084
Glutathione-regulated potassium-efflux system ATP-binding protein
no
0.40
20
Pf6N2E2
_4401
Glycine cleavage system transcriptional activator
0.15
0.40
Or look for
negative cofitness