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  • Top cofit genes for Pf6N2E2_797 from Pseudomonas fluorescens FW300-N2E2

    ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
    SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_1094 Opine oxidase subunit B no 0.28
    2 Pf6N2E2_1423 Gamma-aminobutyrate permease no 0.25
    3 Pf6N2E2_4421 hypothetical protein no 0.25
    4 Pf6N2E2_1477 hypothetical protein no 0.25
    5 Pf6N2E2_1421 ABC-type protease exporter, ATP-binding component PrtD/AprD no 0.24
    6 Pf6N2E2_2386 Magnesium and cobalt transport protein CorA no 0.24
    7 Pf6N2E2_493 YD repeat protein no 0.24
    8 Pf6N2E2_5840 hypothetical protein no 0.24
    9 Pf6N2E2_4950 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) no 0.23
    10 Pf6N2E2_2870 Ribonuclease BN (EC 3.1.-.-) no 0.23
    11 Pf6N2E2_10 PvdE, pyoverdine ABC export system, fused ATPase and permease components no 0.23
    12 Pf6N2E2_3321 Ornithine cyclodeaminase (EC 4.3.1.12) no 0.23
    13 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) no 0.22
    14 Pf6N2E2_3322 Peptide synthetase no 0.22
    15 Pf6N2E2_1014 Nitrate/nitrite transporter no 0.22
    16 Pf6N2E2_3886 ADP compounds hydrolase NudE (EC 3.6.1.-) no 0.22
    17 Pf6N2E2_2376 nitrate transporter (from data) no 0.22
    18 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.27 0.22
    19 Pf6N2E2_110 Cellobiose phosphotransferase system YdjC-like protein no 0.21
    20 Pf6N2E2_629 2-ketogluconate kinase (EC 2.7.1.13) no 0.21

    Or look for negative cofitness