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Cofit
Top cofit genes for Pf6N2E2_6099 from
Pseudomonas fluorescens FW300-N2E2
tRNA-Glu-TTC
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Pf6N2E2
_671
2-methylaconitate racemase
no
0.28
2
Pf6N2E2
_451
transcriptional regulator MvaT, P16 subunit, putative
no
0.23
3
Pf6N2E2
_832
Outer membrane component of tripartite multidrug resistance system
no
0.22
4
Pf6N2E2
_1431
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
no
0.22
5
Pf6N2E2
_4601
Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC
no
0.22
6
Pf6N2E2
_3131
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
no
0.21
7
Pf6N2E2
_962
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
no
0.21
8
Pf6N2E2
_4905
Lhr-like helicases
no
0.21
9
Pf6N2E2
_4557
oxidoreductase, 2OG-Fe(II) oxygenase family
no
0.21
10
Pf6N2E2
_1013
Enoyl-CoA hydratase (EC 4.2.1.17)
no
0.21
11
Pf6N2E2
_5285
FIG067310: hypothetical protein
no
0.20
12
Pf6N2E2
_1341
Bona fide RidA/YjgF/TdcF/RutC subgroup
no
0.20
13
Pf6N2E2
_712
hypothetical protein
no
0.20
14
Pf6N2E2
_949
Outer membrane protein OprN
no
0.19
15
Pf6N2E2
_4300
Uncharacterized protein similar to VCA0109
no
0.19
16
Pf6N2E2
_1782
STAS domain protein
no
0.19
17
Pf6N2E2
_5123
Two-component sensor PilS
no
0.18
18
Pf6N2E2
_4332
hypothetical protein
no
0.18
19
Pf6N2E2
_5185
FIG00961017: hypothetical protein
no
0.18
20
Pf6N2E2
_2349
hypothetical protein
no
0.18
Or look for
negative cofitness