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  • Top cofit genes for Pf6N2E2_5922 from Pseudomonas fluorescens FW300-N2E2

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_2377 Serine/threonine protein kinase (EC 2.7.11.1) 0.12 0.31
    2 Pf6N2E2_3100 FIG00953063: hypothetical protein no 0.27
    3 Pf6N2E2_839 Alkaline phosphatase (EC 3.1.3.1) no 0.27
    4 Pf6N2E2_921 putative nucleoside-diphosphate-sugar epimerase no 0.27
    5 Pf6N2E2_857 hypothetical protein no 0.27
    6 Pf6N2E2_1042 Nitrate/nitrite transporter 0.22 0.27
    7 Pf6N2E2_290 Cold shock protein CspD no 0.26
    8 Pf6N2E2_5923 FIG00956241: hypothetical protein no 0.26
    9 Pf6N2E2_1236 Transcriptional regulator, LysR family no 0.26
    10 Pf6N2E2_1809 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) no 0.26
    11 Pf6N2E2_1046 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.24
    12 Pf6N2E2_1557 hypothetical protein no 0.24
    13 Pf6N2E2_1664 Nitrate/nitrite transporter 0.31 0.24
    14 Pf6N2E2_4094 Radical SAM domain protein no 0.24
    15 Pf6N2E2_1862 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) no 0.24
    16 Pf6N2E2_3874 Thioredoxin-like protein clustered with PA0057 no 0.24
    17 Pf6N2E2_5434 hypothetical protein no 0.24
    18 Pf6N2E2_1714 FIG01218476: hypothetical protein no 0.24
    19 Pf6N2E2_4979 Aldehyde dehydrogenase (EC 1.2.1.3) 0.52 0.23
    20 Pf6N2E2_2858 Phosphohydrolase (MutT/nudix family protein) no 0.23

    Or look for negative cofitness