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  • Top cofit genes for Pf6N2E2_4338 from Pseudomonas fluorescens FW300-N2E2

    Type VI secretion lipoprotein/VasD
    SEED: Type VI secretion lipoprotein/VasD
    KEGG: type VI secretion system protein VasD

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_4341 IcmF-related protein 0.44 0.35
    2 Pf6N2E2_4339 Uncharacterized protein ImpJ/VasE 0.44 0.31
    3 Pf6N2E2_4344 Serine/threonine protein kinase (EC 2.7.11.1) PpkA 0.45 0.29
    4 Pf6N2E2_6027 hypothetical protein no 0.29
    5 Pf6N2E2_4337 Uncharacterized protein ImpI/VasC 0.38 0.27
    6 Pf6N2E2_4000 FIG00956726: hypothetical protein no 0.26
    7 Pf6N2E2_4348 Autotransporter adhesin 0.32 0.25
    8 Pf6N2E2_4334 Uncharacterized protein ImpC 0.37 0.25
    9 Pf6N2E2_4428 Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18) no 0.24
    10 Pf6N2E2_2962 ABC transporter for L-Lysine, ATPase component (from data) 0.47 0.24
    11 Pf6N2E2_4347 FIG00957151: hypothetical protein no 0.24
    12 Pf6N2E2_4926 hypothetical protein no 0.24
    13 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT no 0.23
    14 Pf6N2E2_3062 Membrane-associated zinc metalloprotease no 0.23
    15 Pf6N2E2_1643 Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28) no 0.23
    16 Pf6N2E2_4669 ElaA protein no 0.22
    17 Pf6N2E2_4315 Rhs-family protein 0.26 0.22
    18 Pf6N2E2_4328 Uncharacterized protein ImpH/VasB 0.36 0.22
    19 Pf6N2E2_2438 hypothetical protein no 0.22
    20 Pf6N2E2_2022 BarA-associated response regulator UvrY (= GacA = SirA) no 0.21

    Or look for negative cofitness