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  • Top cofit genes for Pf6N2E2_3735 from Pseudomonas fluorescens FW300-N2E2

    LysR family transcriptional regulator YnfL
    SEED: LysR family transcriptional regulator YnfL

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_2359 hypothetical protein no 0.25
    2 Pf6N2E2_5087 Transcription elongation factor GreB-related protein 0.10 0.25
    3 Pf6N2E2_796 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO no 0.24
    4 Pf6N2E2_5192 FIG00953119: hypothetical protein no 0.24
    5 Pf6N2E2_2232 Virulence factor mviM 0.22 0.23
    6 Pf6N2E2_5869 Helicase subunit of the DNA excision repair complex no 0.23
    7 Pf6N2E2_4106 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone 0.61 0.22
    8 Pf6N2E2_1236 Transcriptional regulator, LysR family no 0.21
    9 Pf6N2E2_218 hypothetical protein no 0.21
    10 Pf6N2E2_1567 FIG00964846: hypothetical protein no 0.21
    11 Pf6N2E2_5467 Response regulator 0.11 0.20
    12 Pf6N2E2_5334 Oxidoreductase, aldo/keto reductase family no 0.20
    13 Pf6N2E2_4684 hypothetical protein no 0.20
    14 Pf6N2E2_2392 ThiJ/PfpI family protein 0.38 0.20
    15 Pf6N2E2_407 Phosphohydrolase (MutT/nudix family protein) no 0.20
    16 Pf6N2E2_603 FIG00953934: hypothetical protein 0.58 0.20
    17 Pf6N2E2_857 hypothetical protein no 0.20
    18 Pf6N2E2_5434 hypothetical protein no 0.20
    19 Pf6N2E2_2976 Type IV secretory pathway, VirJ component no 0.19
    20 Pf6N2E2_1316 P-hydroxyphenylacetate hydroxylase C1:reductase component 0.31 0.19

    Or look for negative cofitness