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  • Top cofit genes for Pf6N2E2_3517 from Pseudomonas fluorescens FW300-N2E2

    tRNA dihydrouridine synthase B (EC 1.-.-.-)
    SEED: tRNA dihydrouridine synthase B (EC 1.-.-.-)

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_2533 Rhodanese domain protein UPF0176 no 0.48
    2 Pf6N2E2_5734 NLP/P60 family protein 0.38 0.43
    3 Pf6N2E2_1387 Cytochrome C550 (Soluble cytochrome C) no 0.41
    4 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.87 0.41
    5 Pf6N2E2_5703 outer membrane protein H1 0.31 0.41
    6 Pf6N2E2_5793 Aspartyl aminopeptidase 0.61 0.40
    7 Pf6N2E2_2384 CmpX no 0.40
    8 Pf6N2E2_1981 FIG051360: Periplasmic protein TonB, links inner and outer membranes no 0.40
    9 Pf6N2E2_4772 Coenzyme PQQ synthesis protein E no 0.40
    10 Pf6N2E2_5929 FIG00954461: hypothetical protein no 0.40
    11 Pf6N2E2_5733 NLP/P60 family protein 0.46 0.39
    12 Pf6N2E2_5436 MutT/nudix family protein 0.57 0.39
    13 Pf6N2E2_4155 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.39 0.39
    14 Pf6N2E2_1389 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) no 0.39
    15 Pf6N2E2_1399 Transcriptional regulator, LuxR family no 0.38
    16 Pf6N2E2_1393 hypothetical protein no 0.38
    17 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.82 0.38
    18 Pf6N2E2_4980 hypothetical protein no 0.37
    19 Pf6N2E2_4776 Coenzyme PQQ synthesis protein F no 0.37
    20 Pf6N2E2_828 Transcriptional regulator, TetR family 0.71 0.37

    Or look for negative cofitness