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  • Top cofit genes for Pf6N2E2_33 from Pseudomonas fluorescens FW300-N2E2

    Diaminopimelate epimerase (EC 5.1.1.7)
    SEED: Diaminopimelate epimerase (EC 5.1.1.7)

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_1173 hypothetical protein no 0.22
    2 Pf6N2E2_678 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster no 0.21
    3 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) no 0.21
    4 Pf6N2E2_3496 lipoprotein, putative no 0.21
    5 Pf6N2E2_1256 Transcriptional regulator, LysR family no 0.20
    6 Pf6N2E2_228 Transcriptional regulator, IclR family no 0.20
    7 Pf6N2E2_3710 3-oxoacyl-[ACP] synthase no 0.20
    8 Pf6N2E2_1313 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) no 0.20
    9 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.26 0.19
    10 Pf6N2E2_4913 Predicted zinc-binding protein no 0.19
    11 Pf6N2E2_3460 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) no 0.19
    12 Pf6N2E2_3892 FIG01270322: hypothetical protein no 0.19
    13 Pf6N2E2_357 hypothetical protein no 0.19
    14 Pf6N2E2_399 Iron siderophore sensor protein no 0.19
    15 Pf6N2E2_5478 ABC spermidine/putrescine transporter, inner membrane subunit no 0.19
    16 Pf6N2E2_1539 Two-component system response regulator QseB no 0.19
    17 Pf6N2E2_5430 Transglycosylase, Slt family no 0.18
    18 Pf6N2E2_2905 CoA transferase, CAIB/BAIF family no 0.18
    19 Pf6N2E2_3790 hypothetical protein no 0.18
    20 Pf6N2E2_2416 FIG00953472: hypothetical protein no 0.18

    Or look for negative cofitness