Top cofit genes for Pf6N2E2_1790 from Pseudomonas fluorescens FW300-N2E2

Sigma-54 dependent transcriptional regulator
SEED: Sigma-54 dependent transcriptional regulator

Rank Hit Name Description Conserved? Cofitness  
1 Pf6N2E2_1423 Gamma-aminobutyrate permease no 0.33
2 Pf6N2E2_8 TonB-dependent siderophore receptor no 0.27
3 Pf6N2E2_313 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.29 0.24
4 Pf6N2E2_796 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO no 0.24
5 Pf6N2E2_4491 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 0.15 0.23
6 Pf6N2E2_1529 hypothetical protein no 0.22
7 Pf6N2E2_5333 Butyryl-CoA dehydrogenase (EC 1.3.99.2) no 0.22
8 Pf6N2E2_5846 Nucleoside ABC transporter, periplasmic nucleoside-binding protein no 0.22
9 Pf6N2E2_1058 FIG000557: hypothetical protein co-occurring with RecR no 0.22
10 Pf6N2E2_4382 FIG00953403: hypothetical protein no 0.21
11 Pf6N2E2_5093 ATP-dependent protease La (EC 3.4.21.53) Type II 0.56 0.21
12 Pf6N2E2_407 Phosphohydrolase (MutT/nudix family protein) no 0.21
13 Pf6N2E2_851 Osmotically inducible protein Y precursor no 0.21
14 Pf6N2E2_232 Protein involved in meta-pathway of phenol degradation no 0.21
15 Pf6N2E2_5633 Aromatic amino acid transport protein AroP no 0.20
16 Pf6N2E2_932 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain no 0.20
17 Pf6N2E2_647 General secretion pathway protein G no 0.20
18 Pf6N2E2_2835 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) no 0.20
19 Pf6N2E2_2998 Prophage tail fiber protein no 0.20
20 Pf6N2E2_43 Histidine permease YuiF no 0.19

Or look for negative cofitness