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  • Top cofit genes for Pf6N2E2_1733 from Pseudomonas fluorescens FW300-N2E2

    Oligopeptide transporter, OPT family
    SEED: Oligopeptide transporter, OPT family

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_2150 Selenophosphate-dependent tRNA 2-selenouridine synthase no 0.30
    2 Pf6N2E2_1689 Probable porin no 0.29
    3 Pf6N2E2_5772 DUF1232 domain-containing protein no 0.29
    4 Pf6N2E2_336 hypothetical protein no 0.29
    5 Pf6N2E2_1949 RND efflux system, inner membrane transporter CmeB no 0.27
    6 Pf6N2E2_2197 Predicted carboxypeptidase no 0.27
    7 Pf6N2E2_3275 FOG: TPR repeat no 0.27
    8 Pf6N2E2_250 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain no 0.27
    9 Pf6N2E2_3984 T1SS associated transglutaminase-like cysteine proteinase LapP no 0.27
    10 Pf6N2E2_2460 Lipase no 0.26
    11 Pf6N2E2_656 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.26
    12 Pf6N2E2_658 sensor histidine kinase no 0.24
    13 Pf6N2E2_4909 Outer membrane protein W precursor no 0.24
    14 Pf6N2E2_1529 hypothetical protein no 0.24
    15 Pf6N2E2_3238 TRAP-type C4-dicarboxylate transport system, periplasmic component 0.37 0.24
    16 Pf6N2E2_1505 Transporter, MFS superfamily no 0.24
    17 Pf6N2E2_1764 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.24
    18 Pf6N2E2_5326 Acetylornithine aminotransferase (EC 2.6.1.11) no 0.24
    19 Pf6N2E2_1793 Inositol transport system sugar-binding protein no 0.24
    20 Pf6N2E2_3731 hypothetical protein no 0.24

    Or look for negative cofitness