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Cofit
Protein
Homologs
Top cofit genes for Pf6N2E2_1689 from
Pseudomonas fluorescens FW300-N2E2
Probable porin
SEED: Probable porin
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Pf6N2E2
_4111
Putative outer membrane lipoprotein
no
0.29
2
Pf6N2E2
_1733
Oligopeptide transporter, OPT family
no
0.29
3
Pf6N2E2
_4162
DNA polymerase I (EC 2.7.7.7)
no
0.29
4
Pf6N2E2
_4642
Putative transport
no
0.28
5
Pf6N2E2
_1219
FIG00955186: hypothetical protein
no
0.27
6
Pf6N2E2
_4886
Catalase (EC 1.11.1.6)
no
0.27
7
Pf6N2E2
_2129
Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup
no
0.27
8
Pf6N2E2
_2535
FIG00954136: hypothetical protein
no
0.27
9
Pf6N2E2
_3238
TRAP-type C4-dicarboxylate transport system, periplasmic component
no
0.27
10
Pf6N2E2
_796
Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO
no
0.27
11
Pf6N2E2
_250
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
no
0.27
12
Pf6N2E2
_4353
Hydrogen peroxide-inducible genes activator
no
0.25
13
Pf6N2E2
_5915
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
no
0.25
14
Pf6N2E2
_1775
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)
no
0.25
15
Pf6N2E2
_1852
Regulatory protein, LuxR:Tetratricopeptide TPR_4
no
0.24
16
Pf6N2E2
_1971
Protein with ParB-like nuclease domain in PFGI-1-like cluster
no
0.24
17
Pf6N2E2
_4416
Tyrosine recombinase XerC
no
0.24
18
Pf6N2E2
_336
hypothetical protein
no
0.24
19
Pf6N2E2
_110
Cellobiose phosphotransferase system YdjC-like protein
no
0.24
20
Pf6N2E2
_5428
DNA recombination and repair protein RecO
no
0.23
Or look for
negative cofitness