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  • Top cofit genes for Pf6N2E2_1666 from Pseudomonas fluorescens FW300-N2E2

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_1668 Xylonate dehydratase (EC 4.2.1.82) (from data) no 0.38
    2 Pf6N2E2_1664 Nitrate/nitrite transporter 0.36 0.37
    3 Pf6N2E2_1665 hypothetical protein no 0.32
    4 Pf6N2E2_2238 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.26
    5 Pf6N2E2_5923 FIG00956241: hypothetical protein no 0.24
    6 Pf6N2E2_3828 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) no 0.24
    7 Pf6N2E2_1736 blr1018; hypothetical protein no 0.24
    8 Pf6N2E2_3714 FIG017861: hypothetical protein no 0.23
    9 Pf6N2E2_5272 Dihydroneopterin triphosphate epimerase 0.45 0.23
    10 Pf6N2E2_2587 Serine phosphatase RsbU, regulator of sigma subunit no 0.23
    11 Pf6N2E2_715 putative membrane protein no 0.23
    12 Pf6N2E2_3192 tRNA:Cm32/Um32 methyltransferase no 0.22
    13 Pf6N2E2_2086 DNA polymerase-like protein PA0670 no 0.22
    14 Pf6N2E2_4480 Xaa-Pro aminopeptidase (EC 3.4.11.9) no 0.22
    15 Pf6N2E2_4362 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) no 0.22
    16 Pf6N2E2_5681 RhtB family transporter no 0.22
    17 Pf6N2E2_4887 Bacterioferritin no 0.22
    18 Pf6N2E2_1441 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) no 0.22
    19 Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) 0.64 0.21
    20 Pf6N2E2_5274 FolM Alternative dihydrofolate reductase 1 no 0.21

    Or look for negative cofitness