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Cofit
Protein
Homologs
Top cofit genes for Pf1N1B4_5841 from
Pseudomonas fluorescens FW300-N1B4
Radical SAM domain protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Pf1N1B4
_4937
Two-component hybrid sensor and regulator
no
0.47
2
Pf1N1B4
_4333
hypothetical protein
no
0.44
3
Pf1N1B4
_4713
Xanthine permease
no
0.43
4
Pf1N1B4
_699
Metallo-beta-lactamase superfamily protein PA0057
no
0.43
5
Pf1N1B4
_5629
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
no
0.43
6
Pf1N1B4
_5886
Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)
no
0.42
7
Pf1N1B4
_5109
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
no
0.42
8
Pf1N1B4
_4869
Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)
no
0.41
9
Pf1N1B4
_98
Nucleoside-specific channel-forming protein Tsx precursor
no
0.41
10
Pf1N1B4
_4389
Sigma-54 dependent transcriptional regulator
no
0.40
11
Pf1N1B4
_5780
Nitrous oxide reductase maturation protein NosD
no
0.40
12
Pf1N1B4
_700
LysR-family transcriptional regulator clustered with PA0057
no
0.39
13
Pf1N1B4
_998
Membrane fusion component of tripartite multidrug resistance system
no
0.39
14
Pf1N1B4
_5763
Nitric oxide reductase activation protein NorQ
no
0.39
15
Pf1N1B4
_5800
Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
no
0.38
16
Pf1N1B4
_695
Aldehyde dehydrogenase (EC 1.2.1.3)
no
0.38
17
Pf1N1B4
_303
Transglycosylase, Slt family
no
0.38
18
Pf1N1B4
_4349
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)
no
0.38
19
Pf1N1B4
_5793
Protein RtcB
no
0.37
20
Pf1N1B4
_3275
L-lysine permease
no
0.36
Or look for
negative cofitness