Top cofit genes for Pf1N1B4_3911 from Pseudomonas fluorescens FW300-N1B4

Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family
SEED: Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family

Rank Hit Name Description Conserved? Cofitness  
1 Pf1N1B4_3115 RNA polymerase sigma factor RpoS 0.73 0.65
2 Pf1N1B4_286 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.25 0.53
3 Pf1N1B4_288 FIG00958794: hypothetical protein 0.29 0.53
4 Pf1N1B4_287 Possible periplasmic thiredoxin 0.28 0.51
5 Pf1N1B4_2114 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) 0.39 0.47
6 Pf1N1B4_3514 Sensor histidine kinase/response regulator 0.29 0.46
7 Pf1N1B4_3501 BarA sensory histidine kinase (= VarS = GacS) 0.64 0.46
8 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.74 0.46
9 Pf1N1B4_2190 Regulator of sigma D 0.78 0.43
10 Pf1N1B4_1655 FIG00553872: hypothetical protein 0.31 0.42
11 Pf1N1B4_5619 BarA-associated response regulator UvrY (= GacA = SirA) 0.57 0.41
12 Pf1N1B4_1555 Polyhydroxyalkanoic acid synthase 0.27 0.40
13 Pf1N1B4_920 ATP-dependent RNA helicase RhlB 0.58 0.40
14 Pf1N1B4_1619 Carboxyl-terminal protease (EC 3.4.21.102) no 0.40
15 Pf1N1B4_5854 FIG00960144: hypothetical protein 0.28 0.40
16 Pf1N1B4_218 Periplasmic binding protein 0.61 0.39
17 Pf1N1B4_1185 Lactate-responsive regulator LldR in Enterobacteria, GntR family no 0.38
18 Pf1N1B4_1115 Dna binding response regulator PrrA (RegA) 0.41 0.38
19 Pf1N1B4_5055 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) no 0.38
20 Pf1N1B4_2917 FIG140336: TPR domain protein no 0.37

Or look for negative cofitness