Top cofit genes for PFLU_RS16995 from Pseudomonas fluorescens SBW25-INTG

response regulator
SEED: Transcriptional regulatory protein RstA
KEGG: two-component system, OmpR family, response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PFLU_RS27025		excinuclease ABC subunit UvrA	0.48	0.27
2	PFLU_RS08400		5'-nucleotidase	no	0.26
3	PFLU_RS29750		phosphate signaling complex protein PhoU	no	0.26
4	PFLU_RS26305		tRNA (uridine(54)-C5)-methyltransferase TrmA	0.33	0.25
5	PFLU_RS29765		ABC transporter permease subunit	no	0.24
6	PFLU_RS20555		aspartate-semialdehyde dehydrogenase	0.53	0.24
7	PFLU_RS01600		OFA family MFS transporter	no	0.24
8	PFLU_RS07710		transcription-repair coupling factor	0.26	0.24
9	PFLU_RS10770		excinuclease ABC subunit UvrC	0.41	0.23
10	PFLU_RS29770		phosphate ABC transporter substrate-binding protein PstS	no	0.23
11	PFLU_RS16635		methyl-accepting chemotaxis protein	no	0.23
12	PFLU_RS25720		tRNA glutamyl-Q(34) synthetase GluQRS	no	0.22
13	PFLU_RS24100		YebC/PmpR family DNA-binding transcriptional regulator	no	0.22
14	PFLU_RS26250		ferredoxin--NADP reductase	no	0.22
15	PFLU_RS18950		MerR family DNA-binding transcriptional regulator	no	0.22
16	PFLU_RS18935		OmpA family protein	no	0.22
17	PFLU_RS23015		TetR/AcrR family transcriptional regulator	no	0.22
18	PFLU_RS14555		glutathione-disulfide reductase	0.61	0.22
19	PFLU_RS29755		phosphate ABC transporter ATP-binding protein	0.39	0.22
20	PFLU_RS03240		copper-translocating P-type ATPase	0.44	0.21

Or look for negative cofitness