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Gene
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Cofit
Protein
Homologs
Top cofit genes for PFLU_RS01235 from
Pseudomonas fluorescens SBW25-INTG
outer membrane porin, OprD family
SEED: probable porin
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PFLU
_RS22460
N-acetylmuramidase family protein
no
0.17
2
PFLU
_RS17595
GDP-mannose pyrophosphatase
no
0.15
3
PFLU
_RS04210
stringent starvation protein A
no
0.14
4
PFLU
_RS16450
methyltransferase domain-containing protein
no
0.14
5
PFLU
_RS10495
shikimate 5-dehydrogenase
no
0.13
6
PFLU
_RS03425
hypothetical protein
no
0.13
7
PFLU
_RS11295
D-xylose ABC transporter ATP-binding protein
no
0.13
8
PFLU
_RS06665
YkgJ family cysteine cluster protein
no
0.13
9
PFLU
_RS00970
Crp/Fnr family transcriptional regulator
no
0.13
10
PFLU
_RS13005
fatty acid cis/trans isomerase
no
0.13
11
PFLU
_RS11600
metallophosphoesterase family protein
no
0.13
12
PFLU
_RS16890
YceI family protein
no
0.13
13
PFLU
_RS09135
alpha/beta fold hydrolase
no
0.12
14
PFLU
_RS15880
LysR family transcriptional regulator
no
0.12
15
PFLU
_RS20165
methyl-accepting chemotaxis protein
no
0.12
16
PFLU
_RS06055
chemotaxis response regulator protein-glutamate methylesterase
no
0.12
17
PFLU
_RS30425
putative phage tail fiber-like protein
no
0.12
18
PFLU
_RS23800
amino acid transporter
no
0.12
19
PFLU
_RS15700
non-ribosomal peptide synthetase
no
0.12
20
PFLU
_RS22875
hypothetical protein
no
0.12
Or look for
negative cofitness