Top cofit genes for MMP_RS05140 from Methanococcus maripaludis S2

helix-turn-helix transcriptional regulator
SEED: Transcriptional regulator, Hth-3 family
KEGG: putative transcriptional regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	MMP_RS04010		ABC transporter substrate-binding protein	no	0.36
2	MMP_RS02570		cation:proton antiporter	no	0.35
3	MMP_RS01750		DUF63 family protein	no	0.35
4	MMP_RS06190		tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	no	0.34
5	MMP_RS04140		phospholipid methyltransferase	no	0.32
6	MMP_RS01155		XRE family transcriptional regulator	no	0.32
7	MMP_RS03730		ABC transporter substrate-binding protein	no	0.32
8	MMP_RS06010		heavy metal translocating P-type ATPase	no	0.31
9	MMP_RS00950		site-2 protease family protein	no	0.31
10	MMP_RS07590		hypothetical protein	no	0.30
11	MMP_RS08570		coenzyme F420-0:L-glutamate ligase	no	0.30
12	MMP_RS08480		molybdate ABC transporter substrate-binding protein	no	0.30
13	MMP_RS04875		energy-converting hydrogenase B subunit P	no	0.29
14	MMP_RS07675		S-layer protein	no	0.28
15	MMP_RS01115		molybdopterin molybdotransferase MoeA	no	0.28
16	MMP_RS06080		radical SAM protein	no	0.28
17	MMP_RS08215		DUF483 domain-containing protein	no	0.28
18	MMP_RS04870		TIGR02253 family HAD-type hydrolase	no	0.27
19	MMP_RS03305		winged helix-turn-helix domain-containing protein	no	0.27
20	MMP_RS07530		4Fe-4S binding protein	no	0.27

Or look for negative cofitness