Top cofit genes for MMP_RS03990 from Methanococcus maripaludis S2

recombinase family protein
SEED: Transposon Tn917 resolvase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	MMP_RS05620		radical SAM protein	no	0.25
2	MMP_RS02580		cupin domain-containing protein	no	0.24
3	MMP_RS01620		hypothetical protein	no	0.22
4	MMP_RS02795		sulfate permease	0.22	0.22
5	MMP_RS08880		hypothetical protein	no	0.21
6	MMP_RS01965		DUF1616 domain-containing protein	no	0.20
7	MMP_RS04520		nucleoside deaminase	0.34	0.20
8	MMP_RS05820		RNA-binding transcriptional accessory protein	no	0.19
9	MMP_RS06745		DUF2119 domain-containing protein	no	0.19
10	MMP_RS04805		chemotaxis response regulator protein-glutamate methylesterase	no	0.19
11	MMP_RS06000		divalent-cation tolerance protein CutA	no	0.19
12	MMP_RS04580		hypothetical protein	no	0.19
13	MMP_RS06155		DUF4186 domain-containing protein	0.51	0.19
14	MMP_RS01940		MoxR family ATPase	0.54	0.19
15	MMP_RS04085		hypothetical protein	no	0.18
16	MMP_RS02250		FRG domain-containing protein	no	0.18
17	MMP_RS03885		tyrosine-type recombinase/integrase	0.30	0.17
18	MMP_RS04840		response regulator	no	0.17
19	MMP_RS03130		hypothetical protein	no	0.17
20	MMP_RS06765		flap endonuclease-1	no	0.16

Or look for negative cofitness