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  • Top cofit genes for MMP_RS03765 from Methanococcus maripaludis S2

    CopG family ribbon-helix-helix protein
    SEED: Nickel responsive regulator NikR
    KEGG: CopG family transcriptional regulator, nickel-responsive regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 MMP_RS03770 hydroxylamine reductase 0.56 0.67
    2 MMP_RS03760 hypothetical protein no 0.55
    3 MMP_RS03780 4Fe-4S binding protein no 0.54
    4 MMP_RS03775 4Fe-4S dicluster domain-containing protein 0.70 0.44
    5 MMP_RS06110 ATP-dependent protease LonB no 0.28
    6 MMP_RS02840 DUF123 domain-containing protein no 0.27
    7 MMP_RS05020 hypothetical protein no 0.27
    8 MMP_RS07615 energy-coupling factor ABC transporter permease no 0.27
    9 MMP_RS04980 DUF2193 domain-containing protein no 0.27
    10 MMP_RS06290 DNA repair and recombination protein RadA no 0.27
    11 MMP_RS07820 UPF0104 family protein no 0.26
    12 MMP_RS04715 CBS domain-containing protein no 0.25
    13 MMP_RS07620 energy-coupling factor ABC transporter substrate-binding protein no 0.24
    14 MMP_RS07625 cobalt ECF transporter T component CbiQ no 0.24
    15 MMP_RS03445 methanogenesis marker 17 protein no 0.23
    16 MMP_RS04985 DUF2180 family protein no 0.23
    17 MMP_RS06015 flavodoxin family protein 0.64 0.23
    18 MMP_RS06855 hypothetical protein no 0.22
    19 MMP_RS01795 methanogenesis marker 6 protein no 0.22
    20 MMP_RS05430 TIGR00288 family NYN domain-containing protein no 0.22

    Or look for negative cofitness