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  • Top cofit genes for MMP_RS00130 from Methanococcus maripaludis S2

    nickel-responsive transcriptional regulator NikR
    SEED: Nickel responsive regulator NikR
    KEGG: CopG family transcriptional regulator, nickel-responsive regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 MMP_RS02875 chorismate pyruvate-lyase family protein no 0.48
    2 MMP_RS08605 flagellar protein E no 0.45
    3 MMP_RS00120 LysR family transcriptional regulator no 0.45
    4 MMP_RS07625 cobalt ECF transporter T component CbiQ no 0.44
    5 MMP_RS05515 cyclic pyranopterin monophosphate synthase MoaC no 0.43
    6 MMP_RS05525 calcium/sodium antiporter no 0.43
    7 MMP_RS05800 B12-binding domain-containing radical SAM protein no 0.43
    8 MMP_RS08600 flagellar protein D no 0.42
    9 MMP_RS08070 DUF2096 domain-containing protein no 0.42
    10 MMP_RS07615 energy-coupling factor ABC transporter permease no 0.42
    11 MMP_RS08590 flagellin no 0.41
    12 MMP_RS07630 ATP-binding cassette domain-containing protein no 0.41
    13 MMP_RS02165 tRNA-dihydrouridine synthase no 0.41
    14 MMP_RS03015 GTP 3' 8-cyclase MoaA 0.48 0.41
    15 MMP_RS03155 precorrin-6A reductase no 0.40
    16 MMP_RS08460 proteasome-activating nucleotidase no 0.40
    17 MMP_RS01250 tRNA (guanine(26)-N(2))-dimethyltransferase no 0.40
    18 MMP_RS07425 GTP-binding protein no 0.40
    19 MMP_RS03580 signal recognition particle-docking protein FtsY no 0.40
    20 MMP_RS06105 hydrogenase maturation peptidase HycI no 0.40

    Or look for negative cofitness