Top cofit genes for LRK54_RS16640 from Rhodanobacter denitrificans FW104-10B01

tRNA pseudouridine(13) synthase TruD
SEED: tRNA pseudouridine 13 synthase (EC 4.2.1.-)
KEGG: tRNA pseudouridine synthase D

Rank	Hit	Name	Description	Conserved?	Cofitness
1	LRK54_RS11745		ribonuclease PH	0.52	0.35
2	LRK54_RS11965		Rieske 2Fe-2S domain-containing protein	no	0.35
3	LRK54_RS04085		HAMP domain-containing histidine kinase	no	0.32
4	LRK54_RS17955		response regulator transcription factor	0.44	0.31
5	LRK54_RS13080		TonB-dependent receptor	no	0.30
6	LRK54_RS08350		glutathione S-transferase family protein	no	0.29
7	LRK54_RS05485		serine hydrolase	0.56	0.29
8	LRK54_RS00550		LytTR family DNA-binding domain-containing protein	no	0.29
9	LRK54_RS09080		cyclic beta 1-2 glucan synthetase	no	0.28
10	LRK54_RS15015		Ppx/GppA family phosphatase	no	0.28
11	LRK54_RS01035		tRNA pseudouridine(55) synthase TruB	0.48	0.27
12	LRK54_RS12165		nucleoside permease	0.58	0.27
13	LRK54_RS13010		LacI family DNA-binding transcriptional regulator	no	0.27
14	LRK54_RS13040		alpha-amylase family glycosyl hydrolase	no	0.26
15	LRK54_RS06530		carbohydrate kinase family protein	no	0.26
16	LRK54_RS02040		transcription-repair coupling factor	no	0.26
17	LRK54_RS06235		murein L,D-transpeptidase catalytic domain family protein	0.71	0.26
18	LRK54_RS02010		Slp family lipoprotein	no	0.26
19	LRK54_RS09850		efflux RND transporter permease subunit	no	0.25
20	LRK54_RS17115		LysR family transcriptional regulator	no	0.25

Or look for negative cofitness