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Cofit
Protein
Homologs
Top cofit genes for LRK54_RS07665 from
Rhodanobacter denitrificans FW104-10B01
DEAD/DEAH box helicase
SEED: Lhr-like helicases
Rank
Hit
Name
Description
Conserved?
Cofitness
1
LRK54
_RS07650
serine protease
no
0.43
2
LRK54
_RS16940
RNA polymerase sigma factor RpoE
no
0.40
3
LRK54
_RS13760
trypsin-like peptidase domain-containing protein
no
0.39
4
LRK54
_RS15770
DUF3014 domain-containing protein
no
0.38
5
LRK54
_RS08815
hypothetical protein
no
0.38
6
LRK54
_RS17505
preprotein translocase subunit SecG
no
0.38
7
LRK54
_RS07535
cyclopropane-fatty-acyl-phospholipid synthase family protein
no
0.37
8
LRK54
_RS08090
carbohydrate porin
no
0.37
9
LRK54
_RS07640
alpha-2-macroglobulin family protein
no
0.37
10
LRK54
_RS07610
YncE family protein
no
0.37
11
LRK54
_RS00080
helix-turn-helix domain-containing protein
no
0.36
12
LRK54
_RS10435
glycerophosphodiester phosphodiesterase
no
0.36
13
LRK54
_RS00670
OmpA family protein
0.30
0.35
14
LRK54
_RS04585
muramoyltetrapeptide carboxypeptidase
no
0.35
15
LRK54
_RS07485
electron transfer flavoprotein-ubiquinone oxidoreductase
no
0.35
16
LRK54
_RS15820
hypothetical protein
no
0.35
17
LRK54
_RS13145
TIGR03016 family PEP-CTERM system-associated outer membrane protein
no
0.35
18
LRK54
_RS14590
N-acetylmuramoyl-L-alanine amidase
no
0.35
19
LRK54
_RS10430
alkaline phosphatase
no
0.34
20
LRK54
_RS03290
RIP metalloprotease RseP
0.16
0.34
Or look for
negative cofitness