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Cofit
Protein
Homologs
Top cofit genes for IAI47_14220 from
Pantoea sp. MT58
type VI secretion system ATPase TssH
SEED: ClpB protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
IAI47
_02020
ABC transporter ATP-binding protein
no
0.27
2
IAI47
_01075
PhzF family phenazine biosynthesis protein
no
0.25
3
IAI47
_03675
M48 family metallopeptidase
no
0.24
4
IAI47
_07430
hypothetical protein
no
0.24
5
IAI47
_14870
DUF799 domain-containing protein
no
0.23
6
IAI47
_15025
transcriptional regulator LldR
no
0.22
7
IAI47
_06095
DsbE family thiol:disulfide interchange protein
no
0.22
8
IAI47
_11405
type VI secretion system tip protein VgrG
no
0.22
9
IAI47
_13630
nicotinamide riboside transporter PnuC
no
0.22
10
IAI47
_07960
Tar ligand binding domain-containing protein
no
0.21
11
IAI47
_13875
PTS transporter subunit EIIC
no
0.21
12
IAI47
_20730
GFA family protein
no
0.21
13
IAI47
_07140
NAD(P)-dependent oxidoreductase
no
0.20
14
IAI47
_21425
HNH nuclease family protein
no
0.20
15
IAI47
_15200
S-methyl-5-thioribose kinase
no
0.19
16
IAI47
_03700
small-conductance mechanosensitive channel MscS
no
0.19
17
IAI47
_08520
exodeoxyribonuclease X
no
0.19
18
IAI47
_16765
ABC transporter permease
no
0.19
19
IAI47
_00750
tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
no
0.19
20
IAI47
_11860
hypothetical protein
no
0.19
Or look for
negative cofitness