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Cofit
Protein
Homologs
Top cofit genes for IAI47_11560 from
Pantoea sp. MT58
RHS repeat protein
SEED: Rhs-family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
IAI47
_14665
transcriptional regulator BolA
no
0.42
2
IAI47
_09970
DeoR/GlpR transcriptional regulator
no
0.42
3
IAI47
_19875
TetR/AcrR family transcriptional regulator
no
0.41
4
IAI47
_21310
helix-turn-helix domain-containing protein
no
0.41
5
IAI47
_03620
16S rRNA (uracil(1498)-N(3))-methyltransferase
no
0.41
6
IAI47
_18595
endoglucanase
no
0.41
7
IAI47
_13305
helix-turn-helix transcriptional regulator
no
0.41
8
IAI47
_07540
hypothetical protein
no
0.40
9
IAI47
_00765
cell-envelope stress modulator CpxP
no
0.40
10
IAI47
_20850
TetR/AcrR family transcriptional regulator
no
0.40
11
IAI47
_00095
hypothetical protein
no
0.40
12
IAI47
_18310
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
0.54
0.39
13
IAI47
_09745
LysR family transcriptional regulator
no
0.39
14
IAI47
_06795
alkyl hydroperoxide reductase subunit F
no
0.38
15
IAI47
_20505
type II toxin-antitoxin system PrlF family antitoxin
no
0.38
16
IAI47
_15535
type I methionyl aminopeptidase
no
0.38
17
IAI47
_11565
DUF1795 domain-containing protein
no
0.38
18
IAI47
_19140
helix-turn-helix transcriptional regulator
no
0.38
19
IAI47
_19055
metal ABC transporter substrate-binding protein
no
0.38
20
IAI47
_10915
3-deoxy-7-phosphoheptulonate synthase
no
0.38
Or look for
negative cofitness