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Cofit
Protein
Homologs
Top cofit genes for IAI47_05250 from
Pantoea sp. MT58
GGDEF domain-containing protein
SEED: GGDEF family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
IAI47
_07895
hypothetical protein
0.48
0.58
2
IAI47
_12480
autoinducer synthase
no
0.58
3
IAI47
_12950
ATP-dependent Clp protease adapter ClpS
no
0.52
4
IAI47
_12485
transcriptional regulator SdiA
0.70
0.50
5
IAI47
_10720
transcriptional regulator SlyA
0.71
0.50
6
IAI47
_16400
GGDEF domain-containing protein
0.53
0.50
7
IAI47
_20380
diaminobutyrate--2-oxoglutarate transaminase
no
0.49
8
IAI47
_10680
TetR/AcrR family transcriptional regulator
0.48
0.48
9
IAI47
_12685
ABC transporter ATP-binding protein
no
0.48
10
IAI47
_10990
DUF481 domain-containing protein
no
0.48
11
IAI47
_05490
tRNA-Val
no
0.47
12
IAI47
_06110
phospholipid-binding lipoprotein MlaA
0.26
0.47
13
IAI47
_06475
transcriptional regulator RcsB
no
0.47
14
IAI47
_08950
peptide-methionine (R)-S-oxide reductase MsrB
no
0.47
15
IAI47
_07965
transcriptional regulator RcsA
no
0.47
16
IAI47
_06790
alkyl hydroperoxide reductase subunit C
0.27
0.46
17
IAI47
_21335
RepB family plasmid replication initiator protein
no
0.45
18
IAI47
_21635
hypothetical protein
no
0.45
19
IAI47
_07540
hypothetical protein
no
0.45
20
IAI47
_04015
cysteine desulfurase CsdA
no
0.44
Or look for
negative cofitness