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  • Top cofit genes for IAI47_04865 from Pantoea sp. MT58

    SoxR-reducing system protein RseC
    SEED: Sigma factor RpoE regulatory protein RseC
    KEGG: sigma-E factor negative regulatory protein RseC

    Rank Hit Name Description Conserved? Cofitness  
    1 IAI47_13890 ROK family transcriptional regulator 0.76 0.43
    2 IAI47_07025 glycosyltransferase family 4 protein no 0.41
    3 IAI47_07030 HAD family hydrolase no 0.40
    4 IAI47_18480 lipid III flippase WzxE 0.84 0.39
    5 IAI47_14595 SmdA family multidrug ABC transporter permease/ATP-binding protein 0.80 0.38
    6 IAI47_21610 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase 0.84 0.38
    7 IAI47_07005 glycosyltransferase family 4 protein 0.75 0.38
    8 IAI47_01355 universal stress protein UspA no 0.38
    9 IAI47_14590 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein 0.79 0.38
    10 IAI47_07015 ABC transporter ATP-binding protein no 0.37
    11 IAI47_13505 excinuclease ABC subunit B 0.49 0.37
    12 IAI47_21535 Fe(2+) transporter permease subunit FeoB 0.38 0.37
    13 IAI47_00430 DNA polymerase I no 0.36
    14 IAI47_10340 mannose-6-phosphate isomerase 0.69 0.36
    15 IAI47_09100 cardiolipin synthase 0.78 0.36
    16 IAI47_09435 GtrA family protein 0.87 0.35
    17 IAI47_17165 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.82 0.35
    18 IAI47_18470 ECA oligosaccharide polymerase 0.83 0.35
    19 IAI47_13720 cytochrome d ubiquinol oxidase subunit II no 0.35
    20 IAI47_00670 sugar glycosyltransferase no 0.34

    Or look for negative cofitness