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Cofit
Protein
Homologs
Top cofit genes for IAI47_02625 from
Pantoea sp. MT58
ribonuclease R
SEED: 3'-to-5' exoribonuclease RNase R
Rank
Hit
Name
Description
Conserved?
Cofitness
1
IAI47
_08700
RNA chaperone ProQ
0.65
0.58
2
IAI47
_12655
Lon protease family protein
0.81
0.58
3
IAI47
_15645
polynucleotide adenylyltransferase PcnB
0.93
0.57
4
IAI47
_17000
lipoprotein NlpI
0.77
0.56
5
IAI47
_12470
UvrY/SirA/GacA family response regulator transcription factor
0.75
0.56
6
IAI47
_08705
carboxy terminal-processing peptidase
0.41
0.53
7
IAI47
_10845
major outer membrane lipoprotein
no
0.53
8
IAI47
_14075
transcription antiterminator/RNA stability regulator CspE
0.76
0.52
9
IAI47
_04110
two-component sensor histidine kinase BarA
0.29
0.50
10
IAI47
_02385
tRNA dihydrouridine synthase DusB
0.62
0.49
11
IAI47
_03410
phosphopentomutase
no
0.47
12
IAI47
_16195
transaldolase
0.76
0.44
13
IAI47
_16420
LacI family DNA-binding transcriptional regulator
no
0.42
14
IAI47
_13415
L,D-transpeptidase family protein
no
0.42
15
IAI47
_03905
TerC family protein
no
0.42
16
IAI47
_05400
sulfate/thiosulfate ABC transporter ATP-binding protein CysA
0.64
0.42
17
IAI47
_17235
stringent starvation protein A
0.73
0.42
18
IAI47
_19880
LysR family transcriptional regulator
no
0.42
19
IAI47
_02705
DUF1107 domain-containing protein
0.48
0.42
20
IAI47
_12780
L,D-transpeptidase
0.64
0.41
Or look for
negative cofitness