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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS22875 from
Herbaspirillum seropedicae SmR1
cysteine hydrolase
SEED: Nicotinamidase (EC 3.5.1.19)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS10535
LysR family transcriptional regulator
no
0.35
2
HSERO
_RS21550
phosphoenolpyruvate carboxykinase
no
0.31
3
HSERO
_RS16840
competence damage-inducible protein A
no
0.31
4
HSERO
_RS16605
oxidoreductase
no
0.30
5
HSERO
_RS04630
3-hydroxy-2-methylbutyryl-CoA dehydrogenase
no
0.30
6
HSERO
_RS08100
nicotinate phosphoribosyltransferase
no
0.29
7
HSERO
_RS00965
trehalose-phosphatase
no
0.27
8
HSERO
_RS20655
phenylacetate-CoA ligase
no
0.27
9
HSERO
_RS20645
3-hydroxyacyl-CoA dehydrogenase
no
0.26
10
HSERO
_RS20650
phenylacetic acid degradation protein
no
0.25
11
HSERO
_RS12225
AraC family transcriptional regulator
no
0.25
12
HSERO
_RS00430
glutamate--cysteine ligase
no
0.25
13
HSERO
_RS20590
fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91)
(from data)
no
0.25
14
HSERO
_RS01560
transporter
no
0.25
15
HSERO
_RS14690
amino acid ABC transporter periplasmic protein
0.37
0.25
16
HSERO
_RS20635
aldehyde dehydrogenase
no
0.25
17
HSERO
_RS20600
transcription regulator protein
no
0.24
18
HSERO
_RS07945
chloride channel protein
no
0.23
19
HSERO
_RS00835
molybdopterin biosynthesis protein MoeB
no
0.23
20
HSERO
_RS21150
aldolase
no
0.23
Or look for
negative cofitness