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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS21870 from
Herbaspirillum seropedicae SmR1
amidase
SEED: putative amidase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS02340
dihydroorotase
0.18
0.31
2
HSERO
_RS06860
AraC family transcriptional regulator
no
0.28
3
HSERO
_RS02125
thiamine biosynthesis protein ThiS
no
0.28
4
HSERO
_RS04125
LysR family transcriptional regulator
no
0.27
5
HSERO
_RS02135
phosphomethylpyrimidine kinase
no
0.27
6
HSERO
_RS02120
phosphomethylpyrimidine synthase ThiC
0.35
0.27
7
HSERO
_RS11090
phosphoribosylglycinamide formyltransferase
no
0.26
8
HSERO
_RS14735
LysR family transcripitonal regulator
no
0.26
9
HSERO
_RS09550
diguanylate cyclase
no
0.26
10
HSERO
_RS16470
tryptophan synthase subunit alpha
no
0.25
11
HSERO
_RS17120
hydroxyacylglutathione hydrolase
0.23
0.25
12
HSERO
_RS16440
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
(from data)
no
0.25
13
HSERO
_RS11065
quinolinate synthetase
0.38
0.24
14
HSERO
_RS11070
nicotinate-nucleotide pyrophosphorylase
0.36
0.24
15
HSERO
_RS01935
3-dehydroquinate dehydratase
0.34
0.24
16
HSERO
_RS02130
thiazole synthase
no
0.24
17
HSERO
_RS03125
SAM-dependent methyltransferase
no
0.24
18
HSERO
_RS17550
amino acid ABC transporter substrate-binding protein
no
0.23
19
HSERO
_RS09575
septum formation inhibitor Maf
no
0.23
20
HSERO
_RS00455
homoserine O-acetyltransferase
no
0.23
Or look for
negative cofitness