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  • Top cofit genes for HSERO_RS20695 from Herbaspirillum seropedicae SmR1

    methyltransferase
    SEED: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)

    Rank Hit Name Description Conserved? Cofitness  
    1 HSERO_RS23345 16S rRNA methyltransferase 0.89 0.48
    2 HSERO_RS00395 hypothetical protein no 0.42
    3 HSERO_RS20680 multidrug DMT transporter permease no 0.39
    4 HSERO_RS02285 nitrate ABC transporter substrate-binding protein 0.22 0.39
    5 HSERO_RS20370 ABC transporter ATP-binding protein 0.20 0.38
    6 HSERO_RS16645 ABC transporter permease no 0.37
    7 HSERO_RS23720 histidine kinase 0.62 0.37
    8 HSERO_RS18745 methyl-accepting chemotaxis protein no 0.36
    9 HSERO_RS08455 chemotaxis protein CheW no 0.36
    10 HSERO_RS06035 hypothetical protein no 0.36
    11 HSERO_RS20710 peptidase M16 0.53 0.36
    12 HSERO_RS01210 GntR family transcriptional regulator 0.58 0.35
    13 HSERO_RS08045 preprotein translocase subunit TatB no 0.35
    14 HSERO_RS03955 ATP synthase no 0.35
    15 HSERO_RS19550 hypothetical protein 0.66 0.34
    16 HSERO_RS17810 glycosyl transferase no 0.34
    17 HSERO_RS07385 hypothetical protein no 0.34
    18 HSERO_RS18560 hypothetical protein no 0.34
    19 HSERO_RS08405 membrane protein 0.76 0.34
    20 HSERO_RS16585 iron ABC transporter permease no 0.34

    Or look for negative cofitness