Top cofit genes for HSERO_RS20650 from Herbaspirillum seropedicae SmR1

phenylacetic acid degradation protein
SEED: Phenylacetic acid degradation protein PaaD, thioesterase
KEGG: phenylacetic acid degradation protein

Rank Hit Name Description Conserved? Cofitness  
1 HSERO_RS20590 fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91) (from data) 0.52 0.61
2 HSERO_RS20660 bifunctional thiolase PaaJ: 3-oxo-5,6-dehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) 0.81 0.60
3 HSERO_RS20635 aldehyde dehydrogenase 0.53 0.59
4 HSERO_RS10535 LysR family transcriptional regulator 0.35 0.59
5 HSERO_RS20655 phenylacetate-CoA ligase 0.78 0.58
6 HSERO_RS20645 3-hydroxyacyl-CoA dehydrogenase 0.58 0.57
7 HSERO_RS20665 2,3-dehydroadipyl-CoA hydratase 0.41 0.56
8 HSERO_RS20640 enoyl-CoA hydratase 0.72 0.47
9 HSERO_RS20605 phenylacetic acid degradation protein PaaY 0.35 0.41
10 HSERO_RS08575 glyoxalase no 0.34
11 HSERO_RS20610 phenylacetate-CoA oxygenase subunit PaaA 0.58 0.33
12 HSERO_RS20595 branched-chain amino acid ABC transporter substrate-binding protein no 0.30
13 HSERO_RS08100 nicotinate phosphoribosyltransferase 0.35 0.28
14 HSERO_RS01990 shikimate 5-dehydrogenase no 0.28
15 HSERO_RS21550 phosphoenolpyruvate carboxykinase no 0.27
16 HSERO_RS20710 peptidase M16 no 0.26
17 HSERO_RS22875 cysteine hydrolase no 0.25
18 HSERO_RS10085 transcriptional regulator 0.36 0.25
19 HSERO_RS20920 3-dehydroquinate synthase no 0.25
20 HSERO_RS19450 indole-3-glycerol-phosphate synthase no 0.25

Or look for negative cofitness