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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS19950 from
Herbaspirillum seropedicae SmR1
Rieske (2Fe-2S) protein
KEGG: vanillate monooxygenase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS05710
aldehyde dehydrogenase
0.24
0.38
2
HSERO
_RS05815
osmotically inducible protein C
no
0.34
3
HSERO
_RS09950
chain-length determining protein
no
0.33
4
HSERO
_RS14045
aldolase
no
0.32
5
HSERO
_RS03905
RNA polymerase subunit sigma-24
no
0.32
6
HSERO
_RS12630
chemotaxis protein CheY
no
0.32
7
HSERO
_RS23005
glutathione S-transferase
no
0.32
8
HSERO
_RS14850
glycosyltransferase
no
0.31
9
HSERO
_RS01150
membrane protein
no
0.31
10
HSERO
_RS00330
SAM-dependent methyltransferase
no
0.30
11
HSERO
_RS03950
type III secretion HrpQ protein
no
0.30
12
HSERO
_RS11540
short-chain dehydrogenase
no
0.29
13
HSERO
_RS02630
membrane protein
no
0.29
14
HSERO
_RS09965
cholera toxin secretion EpsM protein
no
0.29
15
HSERO
_RS13720
hypothetical protein
no
0.29
16
HSERO
_RS04240
C4-dicarboxylate ABC transporter
0.74
0.29
17
HSERO
_RS06880
transcriptional regulator
no
0.28
18
HSERO
_RS10670
signal transduction protein
no
0.27
19
HSERO
_RS17290
chromate transporter
no
0.27
20
HSERO
_RS06780
ABC transporter permease
no
0.27
Or look for
negative cofitness