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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS19605 from
Herbaspirillum seropedicae SmR1
membrane protein
SEED: Integral membrane protein TerC
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS05515
glucose-6-phosphate isomerase
0.49
0.34
2
HSERO
_RS12415
acriflavine resistance protein B
no
0.34
3
HSERO
_RS11490
D-ribose ABC transporter, permease component RbsC
(from data)
no
0.31
4
HSERO
_RS22870
nicotinate phosphoribosyltransferase
no
0.30
5
HSERO
_RS22955
D-amino acid dehydrogenase
no
0.30
6
HSERO
_RS11480
D-ribose ABC transporter, substrate-binding component RbsB
(from data)
no
0.30
7
HSERO
_RS18650
histidine kinase
no
0.30
8
HSERO
_RS13820
hypothetical protein
no
0.30
9
HSERO
_RS11375
dienelactone hydrolase
no
0.29
10
HSERO
_RS11625
dioxygenase
no
0.29
11
HSERO
_RS00780
sugar transferase
0.37
0.29
12
HSERO
_RS12325
arabinose ABC transporter permease
no
0.29
13
HSERO
_RS00935
TonB-denpendent receptor
no
0.29
14
HSERO
_RS13755
hypothetical protein
no
0.29
15
HSERO
_RS10670
signal transduction protein
no
0.29
16
HSERO
_RS13860
sugar ABC transporter substrate-binding protein
no
0.28
17
HSERO
_RS02100
4-oxalocrotonate decarboxylase
no
0.28
18
HSERO
_RS20785
cytochrome oxidase subunit I
0.51
0.28
19
HSERO
_RS07610
fumarate hydratase
no
0.28
20
HSERO
_RS16540
membrane protein
no
0.28
Or look for
negative cofitness