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  • Top cofit genes for HSERO_RS19340 from Herbaspirillum seropedicae SmR1

    amino acid ABC transporter permease
    SEED: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
    KEGG: polar amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HSERO_RS16705 dihydroxy-acid dehydratase no 0.62
    2 HSERO_RS19345 amino acid ABC transporter ATP-binding protein no 0.58
    3 HSERO_RS19350 amino acid ABC transporter no 0.51
    4 HSERO_RS19330 FAH family protein no 0.46
    5 HSERO_RS05170 LacI family transcription regulator no 0.40
    6 HSERO_RS19335 ABC transporter permease 0.39 0.38
    7 HSERO_RS19325 LysR family transcriptional regulator no 0.34
    8 HSERO_RS16610 transcriptional regulator no 0.33
    9 HSERO_RS19535 nucleotide-binding protein no 0.32
    10 HSERO_RS03145 poly(A) polymerase no 0.29
    11 HSERO_RS13620 diguanylate cyclase no 0.29
    12 HSERO_RS17430 LysR family transcriptional regulator no 0.28
    13 HSERO_RS02315 transcriptional regulator no 0.27
    14 HSERO_RS17435 epimerase no 0.26
    15 HSERO_RS11265 GntR family transcriptional regulator no 0.26
    16 HSERO_RS06875 LysR family transcriptional regulator no 0.26
    17 HSERO_RS18365 hypothetical protein no 0.25
    18 HSERO_RS16105 histidine kinase no 0.25
    19 HSERO_RS02465 ATP-dependent DNA helicase RecQ no 0.25
    20 HSERO_RS07035 peptidase M48 no 0.25

    Or look for negative cofitness