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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS19330 from
Herbaspirillum seropedicae SmR1
FAH family protein
SEED: SUGAR TRANSPORTER
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS19325
LysR family transcriptional regulator
no
0.83
2
HSERO
_RS19360
2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141)
(from data)
0.15
0.66
3
HSERO
_RS19345
amino acid ABC transporter ATP-binding protein
no
0.64
4
HSERO
_RS19335
ABC transporter permease
no
0.56
5
HSERO
_RS19355
galactarate dehydratase
no
0.54
6
HSERO
_RS19340
amino acid ABC transporter permease
no
0.46
7
HSERO
_RS19350
amino acid ABC transporter
no
0.43
8
HSERO
_RS06355
2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26)
(from data)
no
0.38
9
HSERO
_RS22475
3-oxoacyl-ACP reductase
0.24
0.36
10
HSERO
_RS16705
dihydroxy-acid dehydratase
0.20
0.36
11
HSERO
_RS22465
sugar ABC transporter
0.27
0.34
12
HSERO
_RS22460
xylose ABC transporter substrate-binding protein
no
0.32
13
HSERO
_RS22455
AraC family transcriptional regulator
no
0.32
14
HSERO
_RS00735
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
(from data)
0.96
0.30
15
HSERO
_RS22470
D-xylose ABC transporter permease
no
0.30
16
HSERO
_RS12770
3-oxoacyl-ACP reductase
no
0.26
17
HSERO
_RS02605
LysR family transcriptional regulator
no
0.25
18
HSERO
_RS02600
bile acid:sodium symporter
no
0.25
19
HSERO
_RS11430
GntR family transcriptional regulator
no
0.24
20
HSERO
_RS21655
elongation factor G
no
0.23
Or look for
negative cofitness