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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS19325 from
Herbaspirillum seropedicae SmR1
LysR family transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS19330
FAH family protein
no
0.83
2
HSERO
_RS19360
2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141)
(from data)
no
0.76
3
HSERO
_RS19355
galactarate dehydratase
no
0.64
4
HSERO
_RS19335
ABC transporter permease
no
0.60
5
HSERO
_RS19345
amino acid ABC transporter ATP-binding protein
no
0.59
6
HSERO
_RS06355
2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26)
(from data)
no
0.53
7
HSERO
_RS22475
3-oxoacyl-ACP reductase
no
0.46
8
HSERO
_RS02600
bile acid:sodium symporter
no
0.45
9
HSERO
_RS19340
amino acid ABC transporter permease
no
0.34
10
HSERO
_RS22465
sugar ABC transporter
no
0.34
11
HSERO
_RS00735
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
(from data)
no
0.33
12
HSERO
_RS22460
xylose ABC transporter substrate-binding protein
0.24
0.33
13
HSERO
_RS19350
amino acid ABC transporter
no
0.33
14
HSERO
_RS22455
AraC family transcriptional regulator
no
0.31
15
HSERO
_RS21550
phosphoenolpyruvate carboxykinase
no
0.29
16
HSERO
_RS02605
LysR family transcriptional regulator
no
0.29
17
HSERO
_RS22470
D-xylose ABC transporter permease
0.17
0.28
18
HSERO
_RS05245
hypothetical protein
no
0.27
19
HSERO
_RS06230
heme biosynthesis protein HemY
0.57
0.26
20
HSERO
_RS05180
sugar ABC transporter permease
no
0.26
Or look for
negative cofitness