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  • Top cofit genes for HSERO_RS19325 from Herbaspirillum seropedicae SmR1

    LysR family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 HSERO_RS19330 FAH family protein no 0.83
    2 HSERO_RS19360 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) (from data) no 0.76
    3 HSERO_RS19355 galactarate dehydratase no 0.64
    4 HSERO_RS19335 ABC transporter permease no 0.60
    5 HSERO_RS19345 amino acid ABC transporter ATP-binding protein no 0.59
    6 HSERO_RS06355 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26) (from data) no 0.53
    7 HSERO_RS22475 3-oxoacyl-ACP reductase no 0.46
    8 HSERO_RS02600 bile acid:sodium symporter no 0.45
    9 HSERO_RS19340 amino acid ABC transporter permease no 0.34
    10 HSERO_RS22465 sugar ABC transporter no 0.34
    11 HSERO_RS00735 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) no 0.33
    12 HSERO_RS22460 xylose ABC transporter substrate-binding protein no 0.33
    13 HSERO_RS19350 amino acid ABC transporter no 0.33
    14 HSERO_RS22455 AraC family transcriptional regulator no 0.31
    15 HSERO_RS21550 phosphoenolpyruvate carboxykinase no 0.29
    16 HSERO_RS02605 LysR family transcriptional regulator no 0.29
    17 HSERO_RS22470 D-xylose ABC transporter permease 0.17 0.28
    18 HSERO_RS05245 hypothetical protein no 0.27
    19 HSERO_RS06230 heme biosynthesis protein HemY 0.57 0.26
    20 HSERO_RS05180 sugar ABC transporter permease no 0.26

    Or look for negative cofitness