Top cofit genes for HSERO_RS16485 from Herbaspirillum seropedicae SmR1

tRNA pseudouridine synthase A
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase A

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HSERO_RS22785		Type I site-specific deoxyribonuclease specificity subunit	no	0.42
2	HSERO_RS04290		DNA-binding protein	no	0.40
3	HSERO_RS18365		hypothetical protein	0.95	0.39
4	HSERO_RS04220		epoxyqueuosine reductase	0.63	0.38
5	HSERO_RS12105		RpiR family transcriptional regulator	0.84	0.37
6	HSERO_RS07290		oligopeptidase A	0.32	0.35
7	HSERO_RS01295		deoxyuridine 5'-triphosphate nucleotidohydrolase	no	0.33
8	HSERO_RS23715		hypothetical protein	no	0.33
9	HSERO_RS21895		TonB-dependent receptor	no	0.32
10	HSERO_RS22790		type I restriction-modification protein subunit M	no	0.31
11	HSERO_RS12325		arabinose ABC transporter permease	no	0.31
12	HSERO_RS02415		hemolysin D	0.38	0.31
13	HSERO_RS07745		glutathione S-transferase	0.89	0.30
14	HSERO_RS14415		Ler DNA-binding protein H-NS	no	0.30
15	HSERO_RS20780		cytochrome C oxidase assembly protein	0.63	0.30
16	HSERO_RS05515		glucose-6-phosphate isomerase	0.53	0.29
17	HSERO_RS20770		MFS transporter	0.64	0.29
18	HSERO_RS06170		S-adenosylmethionine tRNA ribosyltransferase	0.79	0.29
19	HSERO_RS00955		Tail fiber protein	no	0.29
20	HSERO_RS11615		hypothetical protein	no	0.29

Or look for negative cofitness