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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS11645 from
Herbaspirillum seropedicae SmR1
alpha-amylase
SEED: Trehalose synthase (EC 5.4.99.16)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS17810
glycosyl transferase
no
0.45
2
HSERO
_RS08405
membrane protein
no
0.40
3
HSERO
_RS17815
glycosyl transferase
no
0.37
4
HSERO
_RS15265
hypothetical protein
no
0.36
5
HSERO
_RS16710
3-phosphoglycerate dehydrogenase
no
0.36
6
HSERO
_RS16645
ABC transporter permease
no
0.36
7
HSERO
_RS02630
membrane protein
no
0.35
8
HSERO
_RS03815
type VI secretion protein
no
0.35
9
HSERO
_RS05050
MFS transporter
no
0.35
10
HSERO
_RS03995
hypothetical protein
no
0.35
11
HSERO
_RS18865
potassium-transporting ATPase subunit B
0.39
0.35
12
HSERO
_RS02620
cobalt transporter
no
0.34
13
HSERO
_RS02145
ferritin
0.32
0.34
14
HSERO
_RS11650
glycogen branching protein
0.55
0.33
15
HSERO
_RS05035
glyoxalase
no
0.32
16
HSERO
_RS13195
ATPase
no
0.32
17
HSERO
_RS10805
succinyldiaminopimelate aminotransferase
0.48
0.32
18
HSERO
_RS01460
transcriptional regulator
no
0.32
19
HSERO
_RS21845
transcription regulator protein
0.21
0.32
20
HSERO
_RS15630
exodeoxyribonuclease III
0.29
0.32
Or look for
negative cofitness