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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS11305 from
Herbaspirillum seropedicae SmR1
membrane protein
SEED: Probable transmembrane protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS20635
aldehyde dehydrogenase
no
0.33
2
HSERO
_RS03625
nicotinamidase-like protein
no
0.32
3
HSERO
_RS20590
fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91)
(from data)
no
0.32
4
HSERO
_RS20645
3-hydroxyacyl-CoA dehydrogenase
no
0.31
5
HSERO
_RS19980
ABC transporter permease
no
0.30
6
HSERO
_RS20605
phenylacetic acid degradation protein PaaY
no
0.30
7
HSERO
_RS08645
RNA polymerase sigma70 factor
no
0.30
8
HSERO
_RS03510
proline aminopeptidase P II
no
0.29
9
HSERO
_RS02425
transcriptional activator
0.39
0.28
10
HSERO
_RS14000
hypothetical protein
no
0.28
11
HSERO
_RS10535
LysR family transcriptional regulator
no
0.28
12
HSERO
_RS01880
N-acetyl-anhydromuranmyl-L-alanine amidase
no
0.28
13
HSERO
_RS20655
phenylacetate-CoA ligase
0.37
0.28
14
HSERO
_RS09835
hypothetical protein
no
0.27
15
HSERO
_RS15940
peptide ABC transporter substrate-binding protein
0.41
0.27
16
HSERO
_RS15720
hypothetical protein
no
0.27
17
HSERO
_RS16075
coproporphyrinogen III oxidase
0.38
0.27
18
HSERO
_RS14995
cystathionine beta-lyase
0.32
0.27
19
HSERO
_RS07320
hypothetical protein
no
0.27
20
HSERO
_RS19765
amino acid permease
no
0.27
Or look for
negative cofitness