Top cofit genes for HSERO_RS10535 from Herbaspirillum seropedicae SmR1

LysR family transcriptional regulator
SEED: LysR family transcriptional regulator QseA

Rank Hit Name Description Conserved? Cofitness  
1 HSERO_RS20660 bifunctional thiolase PaaJ: 3-oxo-5,6-dehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) no 0.85
2 HSERO_RS20655 phenylacetate-CoA ligase no 0.84
3 HSERO_RS20635 aldehyde dehydrogenase no 0.84
4 HSERO_RS20590 fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91) (from data) no 0.84
5 HSERO_RS20645 3-hydroxyacyl-CoA dehydrogenase no 0.81
6 HSERO_RS20665 2,3-dehydroadipyl-CoA hydratase no 0.79
7 HSERO_RS20640 enoyl-CoA hydratase 0.34 0.72
8 HSERO_RS20605 phenylacetic acid degradation protein PaaY no 0.64
9 HSERO_RS20650 phenylacetic acid degradation protein 0.35 0.59
10 HSERO_RS21550 phosphoenolpyruvate carboxykinase no 0.48
11 HSERO_RS08100 nicotinate phosphoribosyltransferase no 0.42
12 HSERO_RS08575 glyoxalase 0.15 0.41
13 HSERO_RS20595 branched-chain amino acid ABC transporter substrate-binding protein no 0.40
14 HSERO_RS06705 MFS transporter no 0.40
15 HSERO_RS20610 phenylacetate-CoA oxygenase subunit PaaA 0.34 0.39
16 HSERO_RS22875 cysteine hydrolase no 0.35
17 HSERO_RS15920 hypothetical protein no 0.32
18 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase no 0.31
19 HSERO_RS15990 MarR family transcriptional regulator no 0.31
20 HSERO_RS01990 shikimate 5-dehydrogenase no 0.31

Or look for negative cofitness