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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS05220 from
Herbaspirillum seropedicae SmR1
porin
SEED: Outer membrane protein (porin)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS05115
aldehyde dehydrogenase
no
0.50
2
HSERO
_RS16300
peptidase M20
no
0.45
3
HSERO
_RS05105
ribokinase
no
0.43
4
HSERO
_RS05120
deoxyribose-phosphate aldolase
no
0.42
5
HSERO
_RS05215
LysR family transcriptional regulator
no
0.40
6
HSERO
_RS05205
L-arabonate dehydratase (EC 4.2.1.25)
(from data)
no
0.38
7
HSERO
_RS15600
cytosol aminopeptidase
0.81
0.38
8
HSERO
_RS05210
L-arabinose 1-dehydrogenase (EC 1.1.1.46)
(from data)
no
0.37
9
HSERO
_RS16275
5-hydroxyisourate hydrolase
no
0.34
10
HSERO
_RS05200
ABC transporter permease
no
0.33
11
HSERO
_RS22485
amidohydrolase
no
0.33
12
HSERO
_RS16315
adenine permease
no
0.32
13
HSERO
_RS20790
cytochrome B559 subunit alpha
no
0.31
14
HSERO
_RS22460
xylose ABC transporter substrate-binding protein
no
0.31
15
HSERO
_RS22480
dihydroxy-acid dehydratase
no
0.31
16
HSERO
_RS06875
LysR family transcriptional regulator
no
0.31
17
HSERO
_RS11155
peptidyl-prolyl cis-trans isomerase
no
0.30
18
HSERO
_RS05195
xylose ABC transporter ATP-binding protein
no
0.30
19
HSERO
_RS20755
cytochrome C oxidase subunit I
no
0.30
20
HSERO
_RS16325
aldehyde oxidase
0.43
0.30
Or look for
negative cofitness