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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS04555 from
Herbaspirillum seropedicae SmR1
capsid protein
SEED: Phage capsid scaffolding protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS02650
dihydroxy-acid dehydratase
no
0.37
2
HSERO
_RS17185
2-isopropylmalate synthase
no
0.37
3
HSERO
_RS15560
phosphoadenosine phosphosulfate reductase
no
0.36
4
HSERO
_RS16515
isopropylmalate isomerase
no
0.36
5
HSERO
_RS18990
pyrroline-5-carboxylate reductase
no
0.36
6
HSERO
_RS20350
ATP phosphoribosyltransferase (EC 2.4.2.17)
(from data)
no
0.36
7
HSERO
_RS12730
succinylglutamate desuccinylase
no
0.35
8
HSERO
_RS19510
threonine dehydratase
no
0.35
9
HSERO
_RS15575
uroporphyrin-III C-methyltransferase
no
0.35
10
HSERO
_RS16500
3-isopropylmalate dehydrogenase
no
0.35
11
HSERO
_RS08650
acetolactate synthase
no
0.35
12
HSERO
_RS01815
gamma-glutamyl kinase
no
0.35
13
HSERO
_RS04225
permease
no
0.35
14
HSERO
_RS00455
homoserine O-acetyltransferase
0.28
0.35
15
HSERO
_RS20320
1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16)
(from data)
no
0.34
16
HSERO
_RS17000
ABC transporter for D-sorbitol/xylitol, substrate-binding component
(from data)
no
0.34
17
HSERO
_RS07160
phospho-2-dehydro-3-deoxyheptonate aldolase
no
0.34
18
HSERO
_RS19595
glutamate synthase
no
0.34
19
HSERO
_RS20345
histidinol dehydrogenase
no
0.34
20
HSERO
_RS15550
sulfite reductase
0.41
0.34
Or look for
negative cofitness