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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS04040 from
Herbaspirillum seropedicae SmR1
pilus assembly protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS09175
LysR family transcriptional regulator
no
0.40
2
HSERO
_RS06535
LysR family transcriptional regulator
no
0.37
3
HSERO
_RS05830
amino acid ABC transporter permease
no
0.37
4
HSERO
_RS23140
hypothetical protein
no
0.35
5
HSERO
_RS23170
ATPase AAA
no
0.35
6
HSERO
_RS19545
formamidopyrimidine-DNA glycosylase
no
0.34
7
HSERO
_RS10785
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
no
0.34
8
HSERO
_RS14020
LysR family transcriptional regulator
no
0.34
9
HSERO
_RS04945
murein transglycosylase
no
0.33
10
HSERO
_RS22550
ligand-gated channel protein
no
0.32
11
HSERO
_RS13230
cobyric acid synthase
no
0.32
12
HSERO
_RS16790
carbonic anhydrase
no
0.32
13
HSERO
_RS13825
hypothetical protein
no
0.32
14
HSERO
_RS02875
transcriptional regulator
no
0.32
15
HSERO
_RS16770
beta-lactamase
no
0.31
16
HSERO
_RS09370
hypothetical protein
no
0.31
17
HSERO
_RS12500
malto-oligosyltrehalose trehalohydrolase
0.37
0.31
18
HSERO
_RS02045
toxin HipA
no
0.31
19
HSERO
_RS04935
aminoglycoside phosphotransferase
no
0.31
20
HSERO
_RS12835
long-chain fatty acid--CoA ligase
no
0.31
Or look for
negative cofitness