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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS02605 from
Herbaspirillum seropedicae SmR1
LysR family transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS02600
bile acid:sodium symporter
no
0.38
2
HSERO
_RS22475
3-oxoacyl-ACP reductase
no
0.31
3
HSERO
_RS22455
AraC family transcriptional regulator
no
0.31
4
HSERO
_RS19325
LysR family transcriptional regulator
no
0.29
5
HSERO
_RS06355
2,4-diketo-3-deoxy-L-fuconate hydrolase (EC 3.7.1.26)
(from data)
no
0.29
6
HSERO
_RS19360
2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141)
(from data)
no
0.27
7
HSERO
_RS09870
chemotaxis protein CheY
no
0.26
8
HSERO
_RS22460
xylose ABC transporter substrate-binding protein
no
0.26
9
HSERO
_RS22465
sugar ABC transporter
no
0.25
10
HSERO
_RS22485
amidohydrolase
no
0.25
11
HSERO
_RS15575
uroporphyrin-III C-methyltransferase
no
0.25
12
HSERO
_RS22480
dihydroxy-acid dehydratase
no
0.25
13
HSERO
_RS19330
FAH family protein
no
0.25
14
HSERO
_RS07005
hypothetical protein
no
0.25
15
HSERO
_RS22470
D-xylose ABC transporter permease
no
0.24
16
HSERO
_RS03940
hypothetical protein
no
0.24
17
HSERO
_RS07935
serine acetyltransferase
no
0.24
18
HSERO
_RS16965
EmrB/QacA subfamily drug resistance transporter
no
0.23
19
HSERO
_RS22755
ATPase
no
0.23
20
HSERO
_RS19690
methyl-accepting chemotaxis protein
no
0.23
Or look for
negative cofitness