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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS01020 from
Herbaspirillum seropedicae SmR1
hypothetical protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS05235
L-fuconate dehydratase (EC 4.2.1.68)
(from data)
no
0.30
2
HSERO
_RS04015
flagellar biosynthesis/type III secretory pathway protein
no
0.26
3
HSERO
_RS13800
glycosyl transferase family 1
no
0.25
4
HSERO
_RS05535
LysR family transcriptional regulator
no
0.25
5
HSERO
_RS05265
L-fucono-1,5-lactonase
(from data)
no
0.25
6
HSERO
_RS22295
4-hydroxy-4-methyl-2-oxoglutarate aldolase
no
0.25
7
HSERO
_RS20650
phenylacetic acid degradation protein
no
0.25
8
HSERO
_RS05240
short-chain dehydrogenase
no
0.24
9
HSERO
_RS15545
membrane protein
no
0.24
10
HSERO
_RS19355
galactarate dehydratase
no
0.23
11
HSERO
_RS02845
amidohydrolase
no
0.23
12
HSERO
_RS15895
peptide ABC transporter permease
no
0.23
13
HSERO
_RS09480
radical SAM protein
no
0.23
14
HSERO
_RS09040
multidrug DMT transporter permease
no
0.23
15
HSERO
_RS05250
ABC transporter for L-fucose, ATPase component
(from data)
no
0.22
16
HSERO
_RS22940
ABC transporter substrate-binding protein
no
0.21
17
HSERO
_RS06295
membrane protein
no
0.21
18
HSERO
_RS20700
zinc protease
no
0.21
19
HSERO
_RS23430
Zn-dependent hydrolase
no
0.21
20
HSERO
_RS19365
2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH
(from data)
no
0.21
Or look for
negative cofitness