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Cofit
Protein
Homologs
Top cofit genes for HSERO_RS00970 from
Herbaspirillum seropedicae SmR1
glucoamylase
SEED: Glucoamylase (EC 3.2.1.3)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HSERO
_RS00975
alpha,alpha-trehalose-phosphate synthase
0.92
0.71
2
HSERO
_RS04340
gamma-glutamyl ligase
0.89
0.52
3
HSERO
_RS21550
phosphoenolpyruvate carboxykinase
no
0.38
4
HSERO
_RS02120
phosphomethylpyrimidine synthase ThiC
0.57
0.38
5
HSERO
_RS16740
GMC family oxidoreductase
0.33
0.38
6
HSERO
_RS09795
carbon starvation protein A
no
0.37
7
HSERO
_RS02125
thiamine biosynthesis protein ThiS
no
0.37
8
HSERO
_RS02135
phosphomethylpyrimidine kinase
0.70
0.36
9
HSERO
_RS13650
high-affinity Fe2+/Pb2+ permease
0.12
0.35
10
HSERO
_RS00835
molybdopterin biosynthesis protein MoeB
0.85
0.34
11
HSERO
_RS04335
sodium:proton antiporter
0.90
0.33
12
HSERO
_RS16745
gluconate 2-dehydrogenase
no
0.33
13
HSERO
_RS02130
thiazole synthase
no
0.33
14
HSERO
_RS00965
trehalose-phosphatase
0.51
0.33
15
HSERO
_RS07390
tartrate dehydrogenase
0.45
0.31
16
HSERO
_RS07400
LysR family transcriptional regulator
no
0.30
17
HSERO
_RS13645
membrane protein
0.19
0.29
18
HSERO
_RS02140
thiamine-phosphate synthase
0.65
0.29
19
HSERO
_RS13660
membrane protein
no
0.29
20
HSERO
_RS07945
chloride channel protein
no
0.29
Or look for
negative cofitness