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Cofit
Protein
Homologs
Top cofit genes for HMPREF1078_RS15050 from
Parabacteroides merdae CL09T00C40
VapE family protein
SEED: putative helicase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HMPREF1078
_RS02360
PHP domain-containing protein
no
0.59
2
HMPREF1078
_RS15495
winged helix-turn-helix domain-containing protein
no
0.59
3
HMPREF1078
_RS04885
magnesium transporter
no
0.53
4
HMPREF1078
_RS10140
nucleoside transporter C-terminal domain-containing protein
no
0.52
5
HMPREF1078
_RS03870
hypothetical protein
no
0.51
6
HMPREF1078
_RS19750
hypothetical protein
no
0.51
7
HMPREF1078
_RS10670
hypothetical protein
no
0.48
8
HMPREF1078
_RS04180
prolyl oligopeptidase family serine peptidase
no
0.47
9
HMPREF1078
_RS05750
glycoside hydrolase family 2 TIM barrel-domain containing protein
no
0.47
10
HMPREF1078
_RS00195
undecaprenyl-phosphate glucose phosphotransferase
no
0.47
11
HMPREF1078
_RS11930
VOC family protein
no
0.46
12
HMPREF1078
_RS15120
MBL fold metallo-hydrolase
no
0.46
13
HMPREF1078
_RS17690
S4 domain-containing protein
no
0.46
14
HMPREF1078
_RS01895
heavy metal translocating P-type ATPase
no
0.46
15
HMPREF1078
_RS03985
UpxY family transcription antiterminator
no
0.45
16
HMPREF1078
_RS08000
TolC family protein
no
0.45
17
HMPREF1078
_RS05960
ABC transporter permease
no
0.45
18
HMPREF1078
_RS03830
Helicase associated domain protein
no
0.45
19
HMPREF1078
_RS08580
M3 family metallopeptidase
no
0.45
20
HMPREF1078
_RS02130
hybrid sensor histidine kinase/response regulator
no
0.45
Or look for
negative cofitness