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  • Top cofit genes for HMPREF1078_RS14385 from Parabacteroides merdae CL09T00C40

    ATP-binding protein
    SEED: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS06615 PH domain-containing protein no 0.55
    2 HMPREF1078_RS15055 CRISPR-associated helicase/endonuclease Cas3 no 0.44
    3 HMPREF1078_RS02220 cation diffusion facilitator family transporter no 0.43
    4 HMPREF1078_RS18010 site-specific integrase no 0.43
    5 HMPREF1078_RS18750 hydroxylamine reductase no 0.43
    6 HMPREF1078_RS13115 aminopeptidase P family protein no 0.43
    7 HMPREF1078_RS01635 TonB-dependent receptor no 0.42
    8 HMPREF1078_RS04775 YraN family protein no 0.41
    9 HMPREF1078_RS19500 hypothetical protein no 0.39
    10 HMPREF1078_RS15210 FecR family protein no 0.37
    11 HMPREF1078_RS12225 sulfatase no 0.37
    12 HMPREF1078_RS04565 GNAT family N-acetyltransferase no 0.37
    13 HMPREF1078_RS02535 kelch repeat-containing protein no 0.37
    14 HMPREF1078_RS10680 acyloxyacyl hydrolase no 0.37
    15 HMPREF1078_RS08880 N-6 DNA methylase no 0.37
    16 HMPREF1078_RS11100 (d)CMP kinase no 0.37
    17 HMPREF1078_RS14440 phosphatase PAP2 family protein no 0.36
    18 HMPREF1078_RS19815 alpha-L-rhamnosidase C-terminal domain-containing protein no 0.36
    19 HMPREF1078_RS05085 toprim domain-containing protein no 0.36
    20 HMPREF1078_RS15985 Wzz/FepE/Etk N-terminal domain-containing protein no 0.36

    Or look for negative cofitness