Top cofit genes for HMPREF1078_RS13870 from Parabacteroides merdae CL09T00C40

site-specific integrase
SEED: Integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS02980		hypothetical protein	no	0.51
2	HMPREF1078_RS08620		tetratricopeptide repeat protein	no	0.45
3	HMPREF1078_RS07040		hypothetical protein	no	0.44
4	HMPREF1078_RS13855		restriction endonuclease	no	0.43
5	HMPREF1078_RS06700		DUF5107 domain-containing protein	no	0.42
6	HMPREF1078_RS07840		HD domain-containing protein	no	0.40
7	HMPREF1078_RS03155		helix-turn-helix transcriptional regulator	no	0.40
8	HMPREF1078_RS13745		nucleotidyl transferase AbiEii/AbiGii toxin family protein	no	0.40
9	HMPREF1078_RS04440		AAA family ATPase	no	0.39
10	HMPREF1078_RS02585		type II toxin-antitoxin system RelE/ParE family toxin	no	0.38
11	HMPREF1078_RS04435		ParB/RepB/Spo0J family partition protein	no	0.38
12	HMPREF1078_RS15170		hypothetical protein	no	0.38
13	HMPREF1078_RS09650		DUF108 domain-containing protein	no	0.37
14	HMPREF1078_RS08115		ABC transporter permease	no	0.37
15	HMPREF1078_RS04585		SprT family zinc-dependent metalloprotease	no	0.37
16	HMPREF1078_RS19840		hypothetical protein	no	0.37
17	HMPREF1078_RS06130		hypothetical protein	no	0.36
18	HMPREF1078_RS10460		metallophosphoesterase	no	0.36
19	HMPREF1078_RS19650		hypothetical protein	no	0.36
20	HMPREF1078_RS16320		hypothetical protein	no	0.36

Or look for negative cofitness